Thought of posting links to some of my previous work at the Center for Genomics and Bioinformatics(CGB), Indiana University.
URL: BOV CGB
Description: BLAST Output Visualization Tool (BOV) allows users to interactively visualize the BLAST high-scoring segment pairs between query and hit sequences for dissecting complex matching patterns. This software is aimed at facilitating users interested in identifying regions of colinearity, duplication, translocation, and inversion using the BLAST program. Publication:Rajesh Gollapudi, Kashi Vishwanath Revanna, Chris Hemmerich, Sarah Schaack, and Qunfeng Dong (2008)
BOV - A Web-based BLAST Output Visualization Tool. BMC Genomics. 2008 Sep 15;9(1):414. [ PubMed ]
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